After K9 Mark I regenerated into K9 Mark 2, his design was radically altered. His ear probes were replaced with larger silver aerials. A set of blue lights on his head flashed when he spoke. Most of his body was dark silver and a silver dog bone was located under his neck. He seemed to have the same capabilities as Mark I but was presumably more advanced. (TV: Regeneration)
Damaged by the time winds, K9 Mark II could not cross back into N-Space with the Doctor. He decided to stay behind at the Gateway with Romana II to help her free the remaining Tharils from slavery. (TV: Warriors' Gate) Eventually, Romana II and the presumably repaired K9 returned to their own universe and K9 Mark II came to live on Gallifrey. (PROSE: Lungbarrow, WC: Shada, AUDIO: Zagreus)
Before this, the Doctor obtained or constructed at least one backup model of K9. Immediately after leaving Mark I behind with Leela, he unpacked K9 Mark II. This version of K9 accompanied the Doctor and his new companion on their quest to locate the segments of the Key to Time, (TV: The Ribos Operation) but the swampy terrain of Delta III made it impossible for him to join them on the planet. At the conclusion of the quest, the Shadow turned K9 to his evil will, giving K9 a sinister personality. (TV: The Armageddon Factor)
K9 Mark III was a gift from the Doctor to Sarah Jane Smith (TV: A Girl's Best Friend). This K9 was broken for many years, until he was repaired by the Tenth Doctor. This K9 also had a "maximum defence mode", as well as offensive capabilities, such as a nose-mounted laser gun. He sacrificed himself to save Deffry Vale High School from Krillitanes. (TV: School Reunion)
Although the first incarnation of K9 does not appear again in televised Doctor Who media, he is the star of the 2009 K9 television series, in which he undergoes a sort of "regeneration" process from which a new, more sophisticated and futuristic K9 emerges; in the first series of K9, the character is transported to London c. 2050 by Professor Gryffen (Robert Moloney). Though on regeneration the character loses his memory of his adventures with the Doctor, he assists Gryffen and several teenage companions against a dystopian regime of "The Department". The upgraded K9 has new specifications, sporting a sophisticated head-up display, the ability to fly, and more powerful laser weapons.