In 1996, Sarah used K9 to hack into records and find Sam Jones' home address and later to translate Lost Boy's speech. (PROSE: Interference - Book One) K9 was briefly possessed by a malevolent entity, but was freed when Sarah accidentally electrocuted him. (PROSE: The Sow in Rut) K9 began slowly breaking down and eventually ended up deactivated in a cardboard box in Sarah's attic. (PROSE: Moving On) Hilda Winters had K9 dismantled and analysed. (AUDIO: Mirror, Signal, Manoeuvre)

In the spin-off media, K9 Mark II remained Romana's faithful companion for many years. In the early 2000s, John Leeson and Lalla Ward featured in a series of audio plays produced by BBV as K9 and "The Mistress", detailing these characters' adventures in a parallel universe. As neither Romana nor E-Space could be licensed, the aliases of the Mistress and the "pocket universe" were used instead.
K9 Mark 2 had some obvious commonalities with the Mark I that had preceded him. However, as he had almost completely lost his personal memories, he was forced to reacquaint himself with the world around him. Toward this end, he downloaded thousands of human movies onto his memdrive, which peppered his speech with 20th and 21st century English colloquialisms that his "brothers" did not typically employ. (TV: Alien Avatar) Despite his negative opinions of emotions, (TV: Mutant Copper) he asked questions about some, such as fear (TV: Fear Itself) and love (TV: Aeolian). He even showed some, laughing when he saved the day, feeling fear (TV: Fear Itself) and being angry. (TV: Regeneration)

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Introduced into the plot in The Invasion of Time, K9 Mark II first actually appear on-screen in The Ribos Operation (1978). More mobile than his predecessor, Mark II exhibited the ability to sense and warn others of danger. He travels as a companion alongside the Doctor and Romana. Around the time of Romana's regeneration (the transition from actress Mary Tamm to Lalla Ward), the K9 character was explained as suffering from "laryngitis" to accommodate Leeson's departure from the series at the start of the 1979–80 season; for this time, he was portrayed by David Brierley, until Leeson's return for the 1980–81 season. When the Doctor and Romana travel to the parallel universe of E-Space, K9 is severely damaged, in Warriors' Gate (1981). The damage was such that K9 could only function in E-Space; when Romana decided to stay and forge her own path, the Doctor gave K9 to her. The character makes subsequent appearances in remakes of the unfinished serial Shada, alongside the Eighth Doctor (Paul McGann); the 2003 Shada audio play and webcast depict K9 Mark II as having returned to Gallifrey with Romana, now Lady President of the Time Lords, where the Doctor visits them. It is not clear if either of these audio appearances are considered canonical in relation to the continuity of the TV series.
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