During Romana's Presidency of Gallifrey, Leela became her bodyguard, and the two K9 units were forced to work together, not always amicably. After Matthias had replaced Romana as President, he nominated her to undertake a mission to find a cure for the Free Time virus, to be followed by exile. K9 opted to remain in the employ of Matthias, fighting the infection on Gallifrey. However, Braxiatel and K9 had planned another operation. Realising that the only cure to the virus was to end the regeneration capabilities of the Time Lords, Braxiatel used a Time Scoop to collect the Time Lord bio-data archive (along with K9). Romana was asked to decide whether to administer the cure or let Gallifrey die and rebuild it from scratch with the bio-data archive. (AUDIO: Gallifrey)
During an encounter with the sentient painting, the Mona Lisa at the International Gallery, a simulation of K9 Mk IV was created when Mona Lisa was tricked into animating a drawing of K9 made by Clyde inside a cloud of mystic drawing-animation energy. He subsequently defeated The Abomination, another evil painting-come-to-life, before disappearing as the Mona Lisa herself reverted to being an immobile painting. (TV: Mona Lisa's Revenge)
In the spin-off media, K9 Mark II remained Romana's faithful companion for many years. In the early 2000s, John Leeson and Lalla Ward featured in a series of audio plays produced by BBV as K9 and "The Mistress", detailing these characters' adventures in a parallel universe. As neither Romana nor E-Space could be licensed, the aliases of the Mistress and the "pocket universe" were used instead.
Either Inspector Thorne or Lomax found out about K9's regeneration unit and decided to acquire it. Thorne joined forces with Freddie Maxwell, owner of Crashclub involving old robots being made to fight. K9 went undercover as a gladiator and made friends with the robot clowns Chuckles and Boris. He was called to fight the Pain-Maker, who was laced with the explosive solarmite. When he was set to self-destruct, K9 detected this and fled the explosion. (TV: Robot Gladiators) To regain his memory and find out his connection to the STM, K9's archive was scrambled. Directives from the STM almost caused him to self-destruct and lose all his memory. However, with Gryffen and Starkey's help he overrode the directives. (TV: Mind Snap) He helped Gryffen find the STM's temporal stabiliser from the fallen angel crash site in Canada, where it was revealed to be Korven technology. (TV: Angel of the North) He stopped haywire CCPCs when The Last Precinct's plan backfired. (TV: The Last Precinct)
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He usually did not engage in computer-like literal thinking, though on one occasion he followed Romana's instructions to "forget it" to the letter and erased all knowledge of tennis from his memory banks. (TV: The Stones of Blood) In another he took Romana's exclamation "Blast it!" as a command, and fired his blaster. (TV: Shada, WC: Shada, AUDIO: Shada, PROSE: Shada). Despite this, he occasionally showed a sense of humour, jokingly answering the question "What do you eat?" with "Ball bearings" (AUDIO: The Beast of Kravenos).
Introduced into the plot in The Invasion of Time, K9 Mark II first actually appear on-screen in The Ribos Operation (1978). More mobile than his predecessor, Mark II exhibited the ability to sense and warn others of danger. He travels as a companion alongside the Doctor and Romana. Around the time of Romana's regeneration (the transition from actress Mary Tamm to Lalla Ward), the K9 character was explained as suffering from "laryngitis" to accommodate Leeson's departure from the series at the start of the 1979–80 season; for this time, he was portrayed by David Brierley, until Leeson's return for the 1980–81 season. When the Doctor and Romana travel to the parallel universe of E-Space, K9 is severely damaged, in Warriors' Gate (1981). The damage was such that K9 could only function in E-Space; when Romana decided to stay and forge her own path, the Doctor gave K9 to her. The character makes subsequent appearances in remakes of the unfinished serial Shada, alongside the Eighth Doctor (Paul McGann); the 2003 Shada audio play and webcast depict K9 Mark II as having returned to Gallifrey with Romana, now Lady President of the Time Lords, where the Doctor visits them. It is not clear if either of these audio appearances are considered canonical in relation to the continuity of the TV series.