Unlike 25 years earlier where she appeared unconcerned with K9 Mark III being seen, Sarah Jane restricted K9 Mark IV to her Ealing house except in emergencies or when she required his services, lest she have to explain him. Her son Luke covered by explaining to a puzzled Peter Dalton that K9 was a Japanese robot toy with pre-programmed phrases. (TV: The Wedding of Sarah Jane Smith) Nevertheless, she sent K9 to serve Luke when he went away to the University of Oxford. (TV: The Nightmare Man)
Either Inspector Thorne or Lomax found out about K9's regeneration unit and decided to acquire it. Thorne joined forces with Freddie Maxwell, owner of Crashclub involving old robots being made to fight. K9 went undercover as a gladiator and made friends with the robot clowns Chuckles and Boris. He was called to fight the Pain-Maker, who was laced with the explosive solarmite. When he was set to self-destruct, K9 detected this and fled the explosion. (TV: Robot Gladiators) To regain his memory and find out his connection to the STM, K9's archive was scrambled. Directives from the STM almost caused him to self-destruct and lose all his memory. However, with Gryffen and Starkey's help he overrode the directives. (TV: Mind Snap) He helped Gryffen find the STM's temporal stabiliser from the fallen angel crash site in Canada, where it was revealed to be Korven technology. (TV: Angel of the North) He stopped haywire CCPCs when The Last Precinct's plan backfired. (TV: The Last Precinct)
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During Romana's Presidency of Gallifrey, Leela became her bodyguard, and the two K9 units were forced to work together, not always amicably. After Matthias had replaced Romana as President, he nominated her to undertake a mission to find a cure for the Free Time virus, to be followed by exile. K9 opted to remain in the employ of Matthias, fighting the infection on Gallifrey. However, Braxiatel and K9 had planned another operation. Realising that the only cure to the virus was to end the regeneration capabilities of the Time Lords, Braxiatel used a Time Scoop to collect the Time Lord bio-data archive (along with K9). Romana was asked to decide whether to administer the cure or let Gallifrey die and rebuild it from scratch with the bio-data archive. (AUDIO: Gallifrey)
Although the first incarnation of K9 does not appear again in televised Doctor Who media, he is the star of the 2009 K9 television series, in which he undergoes a sort of "regeneration" process from which a new, more sophisticated and futuristic K9 emerges; in the first series of K9, the character is transported to London c. 2050 by Professor Gryffen (Robert Moloney). Though on regeneration the character loses his memory of his adventures with the Doctor, he assists Gryffen and several teenage companions against a dystopian regime of "The Department". The upgraded K9 has new specifications, sporting a sophisticated head-up display, the ability to fly, and more powerful laser weapons.